PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G113300.2
Common NameB456_007G113300, LOC105802851
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 377aa    MW: 42592.2 Da    PI: 6.034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G113300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-14190241155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gorai.007G113300.2 190 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 241
                         79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.10E-12188245No hitNo description
SuperFamilySSF474596.94E-17189254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.126189240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11190241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-15190252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MFLGEHLEVE CLEQGFISCE RLKLGEEEEE EAHFSIPSFE EKMPFLQMLQ SVESPQLFAF  60
KEPNFQTLLR LQHMKKPWEL NTNPFIPEME TQVQALELES CVTHETVLDL HSPVKSETKE  120
LKKSPPSSSC AEVLSSGSNQ HQPKSDNCSG EPNLGSSPQK IFTKSPPITR ERRKRKRTKA  180
AKNKEEVESQ RMTHIAVERN RRRQMNDYLN SLRSLMPPCY IQRGDQASII AGAIDFVKEL  240
EQLLQSLEAQ KRTGKVHESN NSMSNPAMEI HQQEYENGSE DGHCGEEVKA ESKTGAAEVE  300
VNVIHNHVNL KIQCSRRAGQ LIQAIVTLET LRLTVLHLNI TTSRASVLYS FNLKMEDDSA  360
LRSADEIAAA VHQIFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176RRKRKR
2190201RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490190.10.0PREDICTED: transcription factor bHLH67-like isoform X2
TrEMBLA0A0D2TDA40.0A0A0D2TDA4_G
STRINGPOPTR_0014s10190.11e-129(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.15e-63bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]